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Showing posts with the label Snakemake
Using Conda Enviroment In Snakemake On Sge Cluster Problem

Using Conda Enviroment In Snakemake On Sge Cluster Problem

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Related: SnakeMake rule with Python script, conda and cluster I have been trying to set up my Snake… Read more Using Conda Enviroment In Snakemake On Sge Cluster Problem
Snakemake Workflow On Split Files

Snakemake Workflow On Split Files

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Perhaps this question has already been answered but I could not come up with the correct query to f… Read more Snakemake Workflow On Split Files
Parallelizing Snakemake Rule

Parallelizing Snakemake Rule

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Sorry if this is a naive question, but I'm still trying to wrap my head around the intricacies … Read more Parallelizing Snakemake Rule
How To Make Snakemake Input Optional But Not Empty?

How To Make Snakemake Input Optional But Not Empty?

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I'm building an SQL script out of text data. The (part of) script shall consist of a CREATE TAB… Read more How To Make Snakemake Input Optional But Not Empty?