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I'm trying to assign flat, single-linkage clusters to sequence IDs separated by an edit distanc… Read more Single Linkage Clustering Of Edit Distance Matrix With Distance Threshold Stopping Criterion

I am working on a python project where I study RNA structure evolution (represented as a string for… Read more Can I Use K-means Algorithm On A String?

I have a DNA sequence and would like to get reverse complement of it using Python. It is in one of … Read more Reverse Complement Of Dna Strand Using Python

I have a FASTA file with IDs and corresponding DNA sequences which I have parsed and stored into a … Read more Hamming Distance Matrix For Multiple Sequences

Input fasta-format text file: http://www.jcvi.org/cgi-bin/tigrfams/DownloadFile.cgi?file=/opt/www/w… Read more Biopython Alignio Valueerror Says Strings Must Be Same Length?

I am trying to find corresponding keys in two different dictionaries. Each has about 600k entries.… Read more Finding Matching Keys In Two Large Dictionaries And Doing It Fast

I just wrote a function that will look at a text file and count all of the instances of True and Fa… Read more What Causes Python Error 'bad Escape \c'?

So I have a csv file where each line represents hierarchical data in the form: 'Phylum',… Read more Convert Csv To Newick Tree